PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 861519
Common NameARALYDRAFT_660963
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 188aa    MW: 21152.1 Da    PI: 7.5809
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
861519genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.6e-18655255
     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
            +++GVr++  +g+Wv+eIr+p        +r++lg+f tae Aa+a+++a++ ++g
  861519  6 KFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAALLMNG 55
            89****999.**********8.....334**********************98877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-32564IPR001471AP2/ERF domain
CDDcd000187.68E-23665No hitNo description
PfamPF008471.2E-11655IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-20664IPR016177DNA-binding domain
SMARTSM003803.0E-39669IPR001471AP2/ERF domain
PROSITE profilePS5103222.221663IPR001471AP2/ERF domain
PRINTSPR003672.8E-10718IPR001471AP2/ERF domain
PRINTSPR003672.8E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MGHSRKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA LLMNGQNAKT  60
NFPVVKSEEG SDHVKDVNSP LMSPKSLSEL LNAKLRKSCK DLTPSLTCLR LDTDSSHIGV  120
WQKRAGSKTS PTWVMRLELG NIVNESAVDL GLTTMKKQNV EKEEEQEAIS DEDQLAMEMI  180
EELLNWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-16464364ATERF1
3gcc_A2e-16464364ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5608650.0AY560865.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g11190) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871461.11e-137predicted protein
SwissprotQ9LFN71e-118SHN2_ARATH; Ethylene-responsive transcription factor SHINE 2
TrEMBLD7M3M81e-137D7M3M8_ARALL; Predicted protein
STRINGAl_scaffold_0006_10281e-137(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11190.11e-112ERF family protein